Identification of MYH6 as the potential gene for human ischaemic cardiomyopathy

The present study aimed to explore the potential hub genes and pathways of ischaemic cardiomyopathy (ICM) and to investigate the possible associated mechanisms. Two microarray data sets ( GSE5406 and GSE57338 ) were downloaded from the Gene Expression Omnibus (GEO) database. The limma package was used to analyse the differentially expressed genes (DEGs). Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, Disease Ontology (DO) and Gene Ontology (GO) annotation analyses were performed. A protein-protein interaction (PPI) network was set up using Cytoscape software. Significant modules and hub genes were identified by the Molecular Complex Detection (MCODE) app. Then, further functional validation of hub genes in other microarrays and survival analysis were performed to judge the prognosis. A total of 1065 genes were matched, with an adjusted p < 0.05, and 17 were upregulated and 25 were downregulated with|log₂ (fold change)|≥1.2. After removing the lengthy entries, GO identified 12 items, and 8 pathways were enriched at adjusted p < 0.05 (false discovery rate, FDR set at <0.05). Three modules with a score >8 after MCODE analysis and MYH6 were ultimately identified. When validated in GSE23561 , MYH6 expression was lower in patients with CAD than in healthy controls (p < 0.05). GSE60993 data suggested that MYH6 expression was also lower in AMI patients (p < 0.05). In the GSE59867 data set, MYH6 expression was lower in CAD patients than in AMI patients and lower in heart failure (HF) patients than in non-HF patients. However, there was no difference at different periods within half a year, and HF was increased when MYH6 expression was low (p < 0.05–0.01). We performed an integrated analysis and validation and found that MYH6 expression was closely related to ICM and HF. However, whether this marker can be used as a predictor in blood samples needs further experimental verification.     

Production of reactive oxygen species by withaferin A causes loss of type collagen expression and COX-2 expression through the PI3K/Akt,p38, and JNK pathways in rabbit articular chondrocytes

Withaferin A (WFA) is a major chemical constituent of Withania somnifera, also known as Indian ginseng. Many recent reports have provided evidence of its anti-tumor, anti-inflammation, anti-oxidant, and immune modulatory activities. Although the compound appears to have a large number of effects, its defined mechanisms of action have not yet been determined.     

What’s to like about the prion-like hypothesis for the spreading of aggregated α-synuclein in Parkinson disease?

α-Synuclein is a key protein in Parkinson disease. Not only is it the major protein component of Lewy bodies, but it is implicated in several cellular processes that are disrupted in Parkinson disease. Misfolded α-synuclein has also been shown to spread from cell-to-cell and, in a prion-like fashion, trigger aggregation of α-synuclein in the recipient cell. In this mini-review we explore the evidence that misfolded α-synuclein underlies the spread of pathology in Parkinson disease and discuss why it should be considered a prion-like protein.     

Heterologous Expression of the Oceanobacillus iheyensis SigW and Its Anti-Protein RsiW in Bacillus subtilis

Pairs of the ECF sigma factor and its anti-sigma factor, SigW and RsiW, of Bacillus-related species that inhabit extreme environments were heterologously expressed in B. subtilis. All the RsiWs, membrane proteins, failed to fill their function of repressing cognate SigW activity, despite their close structural similarities. Particularly, uncontrolled expression of Oceanobacillus iheyensis OISigW due to abortive OIRsiW was harmful to B. subtilis. Analysis of revertants of this growth defect and site-directed mutagenesis indicated that the insertion of six and a minimum of three hydrophobic amino acid residues occurring in the transmembrane region allowed OIRsiW to function as anti-OISigW. Subcellular localization of OIRsiW was detected by immunoblot analysis, suggesting that both the wild-type and the mutant form of OIRsiW were localized to the membrane. An appropriate length of a transmembrane region required for proper integration into the membrane after translocation might vary among these Bacillus-related species.     

Rendiconti Delle Sedute E Brevi Comunicazioni

Abstract

The development of effective strategies to rehabilitate compromised environments is one of the major challenges facing the postindustrial society, since most of the habitats are becoming progressively polluted due to indiscriminate discharge of contaminants generated by anthropogenic activities. Several aquatic photosynthetic organisms can be used to treat wastewaters in primary and tertiary treatments, including cyanobacteria, algae and higher plants. In this review, we summarize the results obtained in the remediation of polluted waters by photosynthetic organisms and discuss the future perspective of phytoremediation.     

饵料蛋白水平对德国小蠊肠道细菌群落的影响

昆虫肠道微生物在宿主营养代谢、生长发育、免疫以及抵御病原菌等方面具有重要作用。研究不同蛋白水平饵料饲养对德国小蠊（Blattella germanica）雄成虫肠道细菌群落组成及其功能的作用，探究德国小蠊肠道细菌对宿主营养和健康的影响，以期为发展生物防治的诱食性饵料提供理论支持。分别取连续饲喂低蛋白（LP2组：5%）、高蛋白（HP3组：65%）以及正常蛋白水平饵料（CD1组：25%）21 d的德国小蠊雄成虫，饥饿24 h后无菌条件下分离并提取肠道总基因组DNA，采用特异引物扩增细菌16S rDNA的V4可变区并进行高通量测序，分析德国小蠊肠道细菌群落组成及其功能特征。结果表明德国小蠊肠道细菌主要由拟杆菌门（Bacteroidetes）、变形菌门（Proteobacteria）、梭杆菌门（Fusobacteria）和厚壁菌门（Firmicutes）等细菌群落组成。饲喂低蛋白饵料LP2组的德国小蠊肠道细菌中拟杆菌属（Bacteroides）细菌丰度（47.44%）显著高于HP3组（23.97%）和对照CD1（7.04%）。饲喂高蛋白饵料的HP3组梭杆菌门丰度显著高于其他两组。LEfSe物种差异分析也表明HP3组德国小蠊肠道细菌中梭杆菌属（Fusobacterium）细菌与低蛋白饵料LP2组和对照CD1组有显著差异。基于Tax4Fun功能预测显示，HP3高蛋白饵料组的德国小蠊肠道细菌中与能量代谢功能相关基因的相对丰度极显著高于对照组CD1组，外源性物质代谢与降解和其他氨基酸代谢功能基因的相对丰度显著高于低蛋白LP2组。本研究结果表明饵料中蛋白质水平的差异能够显著改变德国小蠊肠道中细菌群落结构组成，并影响其代谢功能。     

Proteome-wide mapping of short-lived proteins in human cells

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PQBP1 promotes translational elongation and regulates hippocampal mGluR-LTD by suppressing eEF2 phosphorylation

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